The return of the full fuel excise tax will start showing up at the pump in a matter of days.
The fuel tax was halved by the former Morrison government to reduce fuel prices when the conflict in Ukraine caused prices to soar above $2 a litre.
The temporary policy was in place for six months and ended on Wednesday night.
Treasurer Jim Chalmers said the tax cut, amounting to around 22 cents off every litre, was too costly to continue.
He said it would take a few days for higher prices to flow through as retailers would need to work through their supplies of discounted fuel first.
Dr Chalmers also said the consumer watchdog would be looking out for retailers charging needlessly high prices.
"I have asked the chair of the Australian Competition and Consumer Commission to maximise their role in the petrol market to make sure servos and suppliers are not treating Australians as mugs," he told reporters on Wednesday.
The NRMA's Peter Khoury said fuel prices were already too high given oil prices had plummeted and the fuel excise had only just taken effect.
"We need to see a correction immediately," he said on Wednesday.
Australian Competition and Consumer Commission chair Gina Cass-Gottleib said the watchdog was tracking price increases daily in all capital cities and at over 190 regional locations.
"If we see a rise that is other than we expect, we will certainly report it so that motorists know," she told ABC radio on Thursday.
"If we see an extreme rise, we will not only refer to the location, we will refer to the actual chain or service station that is doing so, so that motorists basically know to avoid them."